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To create clickable links in a LaTeX PDF, load hyperref near the end of the preamble. Use \url to print a URL, \href for custom link text, and ordinary \label/\ref commands for clickable internal references.
Quick answer: add \usepackage{hyperref} near the end of your preamble. Use \url{https://example.com} for a visible URL, \href{https://example.com}{link text} for descriptive text, and \autoref{sec:methods} for a clickable reference that includes its type.

Minimal Setup

hyperref-setup.tex
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Load hyperref after most other packages so it can patch references correctly. Packages that extend its references may have their own order requirements; for example, load cleveref after hyperref. If you want clickable links without colored text or border boxes, use this instead:
hidden-link-style.tex
Use \url when you want to print the URL itself, and use \href when you want custom anchor text.
external-links.tex
Internal links usually come from labels and references:
internal-links.tex
If hyperref is loaded, these references become clickable in the final PDF. Use \hypertarget to create a named destination and \hyperlink to jump to it. These commands are useful when the destination is not a numbered section, figure, table, or equation.
custom-anchor.tex
Prefer \label with \ref or \autoref when the destination already has a LaTeX number. Those references stay correct when sections or figures move. colorlinks=true colors the link text. Without it, many PDF viewers draw colored boxes around links. Use separate colors so readers can distinguish internal references, citations, and external URLs.
hyperlink-options.tex
For print-oriented documents, hidelinks is often preferable because it keeps links active without changing the visible text style. For unnumbered sections, add a manual anchor before writing the label:
phantomsection.tex
This ensures the PDF link points to the right place.

Common hyperref problems