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Use hyperref to make references and navigation clickable in PDF output.

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Core Setup

hyperref-setup.tex
\usepackage[colorlinks=true,linkcolor=blue,citecolor=teal,urlcolor=magenta]{hyperref}
\hypersetup{
  pdftitle={Project Title},
  pdfauthor={Your Name},
  pdfsubject={Technical Report}
}
links.tex
\url{https://www.latex-cloud-studio.com}
\href{https://www.overleaf.com/learn}{Overleaf Learn}

\section{Methods}\label{sec:methods}
See Section~\ref{sec:methods}.
Use \autoref{sec:methods} for automatic label text.
phantomsection.tex
\section*{Appendix Resources}
\phantomsection
\label{sec:appendix-resources}
\addcontentsline{toc}{section}{Appendix Resources}